Listed below are the department's major divisions and programs linked to their respective web pages, where available.

Office of the Commissioner

• Office of Communications
• Office of Diversity and Equity Services
• Office of Human Resources
• Office of Legal and Regulatory Affairs
  • Administrative Rulemaking Process
• Office of Legislative Services
• Office of Minority and Multicultural Health
• Office of the State Epidemiologist
  
  • Comprehensive Tobacco Control Program
  • New Jersey Commission on Cancer Research
  • Office of Cancer Control and Prevention
• Office of Policy
  • Center for Health Statistics
  • Institutional Review Board
  • Office of Healthcare Quality Assessment
  • Office of Planning and Development for Senior Services
  • New Jersey Commission on Health Information Technology
  • New Jersey Commission on Brain Injury Research
  • New Jersey Commission on Spinal Cord Research

Public Health Services

• Epidemiology, Environmental and Occupational Health
  
  • Communicable Disease Service
  • Consumer, Environmental and Occupational Health Service
  • Cancer Epidemiology Services
    
• Health Infrastructure Preparedness and Emergency Response
• HIV/AIDS Services
• Family Health Services
• Public Health and Environmental Laboratories
  

Senior Services and Health Systems

• Aging & Community Services
  
• Health Facilities Evaluation and Licensing
  
• Senior Benefits Utilization & Management
  

Management and Administration

• Budget and Finance
• Hospital Finance and Charity Care
• Information Technology
• Vital Statistics and Registration